Publications

Below is a list of articles published, submitted or in press that have been possible thanks to the funding of the 2015-2016 BiodivERsA COFUND call. They all integrate the following sentence in the acknowledgement section:

“This research was funded through the 2015-2016 BiodivERsA COFUND call for research proposals, with the national funders ANR (ANR-16-EBI3-0014), FCT (Biodiversa/0003/2015) and PT-DLR (01LC1617A)“.

  1. Chikhi L , Rodriguez WV, Grusea S, Santos P, Boitard S, Mazet O (2017) The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice. Heredity, 120: 13-24.   doi:10.1038/s41437-017-0005-6. You can find the published version here and the supplementary material here.
  2. Sgarlata GM, Salmona J, Aleixo-Pais I, Rakotonanahary A, Sousa AP, Kun-Rodrigues C, Ralantoharijaona T, Jan F, Zaranaina R, Rasolondraibe E, Zaonarivelo JR, Andriaholinirina Volasoa N, Chikhi L (2018) Genetic differentiation and demographic history of Northern rufous mouse lemur (Microcebus tavaratra) across a fragmented landscape in Northern Madagascar. Int. J. Primatol., 39: 65-89. doi:10.1007/s10764-018-0015-0. You can find the published version here and the supplementary material here.
  3. Grusea S, Rodríguez W, Pinchon D, Chikhi L, Boitard S, Mazet O (2018) Coalescence times for three genes provide sufficient information to distinguish population structure from population size changes. J. Math. Biol. doi:10.1007/s00285-018-1272-4. You can find the online version here.
  4. Rodríguez W, Mazet O, Grusea S, Arredondo A, Corujo JM, Boitard S, Chikhi L (2018) The IICR and the non-stationary structured coalescent: towards demographic inference with arbitrary changes in population structure. Heredity, 121:663-678.  https://doi.org/10.1038/s41437-018-0148-0. You can find the supplementary material here.
  5. Aleixo‑Pais I, Salmona J, Sgarlata GM, Rakotonanahary A, Sousa AP, Parreira B, Kun‑Rodrigues C, Ralantoharijaona T, Jan F, Rasolondraibe E, Minhós T, Zaonarivelo JR, Andriaholinirina NV, Chikhi L (2018) The genetic structure of a mouse lemur living in a fragmented habitat in Northern Madagascar. Conservation Genetics,  https://doi.org/10.1007/s10592-018-1126-z. You can find the supplementary material here.
  6. Knoop S, Chikhi L, Salmona J (2018) Mouse lemurs’ of degraded habitat: a review of the literature. Lemur News, 21, 20-31. You can find the online version here.
  7. Miller A, Mills H, Ralantoharijaona T, Volasoa Andriaholinirina N, Missandeau C, Chikhi L, Bencini R, Salmona J (2018) Forest type influences population densities of nocturnal lemurs in Manompana, Northeastern Madagascar. Int. J. Primatology, 39, 646-669. https://doi.org/10.1007/s10764-018-0055-5. You can find the supplementary material here.
  8. Salmona J, Rasolondraibe E, Jan F, Rakotonanahary AN, Ralantoharijaona T, Le Pors B, Ousseni DSA, Aleixo-Pais I, Marques AJD, Sgarlata GM, Teixeira H, Gabillaud V, Miller A, Ibouroi MT, Zaonarivelo JR, Andriaholinirina NV, Chikhi L (2018) Re-discovering the forgotten Phaner population of the small and isolated Analafiana forest (Vohémar, SAVA). Lemur News, 21, 31-36. You can find the online version here.
  9. Andriatsitohaina B, Ramsay MS, Kiene F, Lehman SM, Rasoloharijaona S, Rakotondravony R, Radespiel U. (2019) Ecological fragmentation effects in mouse lemurs and small mammals in northwestern Madagascar. Am J Primatol. 2019;e23059. https://doi.org/10.1002/ajp.23059. You can find the online version here.
  10. Radespiel U, Lutermann H, Schmelting B, Zimmermann E. (2019) An empirical estimate of the generation time of mouse lemurs. Am J Primatol. 2019;e23062.           https://doi.org/10.1002/ajp.23062. You can find the online version here.
  11. Olofsson JK, Cantera I, Van de Paer C, Hong-Wa C, Zedane L, Dunning LT, Alberti A, Christin PA, Besnard G (2019) Phylogenomics using low-depth whole genome sequencing: a case study with the olive tribe (Oleeae). Molecular Ecology Resources 19: 877-892. https://doi.org/10.1111/1755-0998.13016. You can find the online version here.
  12. Salmona J, Olofsson JK, Hong-Wa C, Razanatosa J, Rakotonasolo F, Ralimanana H, Randriamboavonjy T, Suescun U, Vorontosova MS, Besnard G (2019) Late Miocene origin and recent population collapse of the savanna Malagasy olive (Noronhia lowryi), Biological Journal of the Linnean Society  129: 227-243 1-17. https://doi.org/10.1093/biolinnean/blz164. You can find online version here. 
  13. Sgarlata GM, Salmona J, Le Pors B, Rasolondraibe E, Jan F, Ralantoharijaona T, Rakotonanahary A, Randriamaroson J, Marques AJ, Aleixo Pais I, Zoeten T, Ousseni DSA, Knoop SB, Teixeira H, Gabillaud V, Miller A, Ibouroi MT, Rasoloharijaona S, Zaonarivelo JR, Andriaholinirina NV, Chikhi L (2019). Genetic and morphological diversity of mouse lemurs (Microcebus spp.) in northern Madagascar: The discovery of a putative new species? Am J Primatol. 0:e23070. https://doi.org/10.1002/ajp.23070. You can find online version here.
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